     12    960

XMA                             GGC CCG GAG CGA CTC CTG GCC CGG GGC GCG GTG CCG GCC CTG TGC CGG AGG GCG CTG TCG CTG CTG GGC TGC CTG CTG AGA ACC AGA GAG GAA GCC TGG CGC AAA CAC CCA GCA GAA CTC CTC TCT CTG CTG CTC AGG CTC TGC TCG GAG TTC TGC CGG GCC TCG GAC CAG ACC CGG CTC CAG ATG TGC GCC CAG CTG GTG CGG TTC CTG CCG GAG GCG GTG GGC TGG GCG GCG CTG AGA CCC ACG CTG CAG GCC AAG CTG ACG CCC AAA CAG ATC GGG CCG GTT CTG GTT CTA AGT GCC TGC TTA TTG GAC CTG TAT GGC TGG GAG TCG GTG TTC TGC TGC CTG CTG GTG AAC CGG GCC TGC GTG GAG GTC CGG ATG GGT CTG GGG AAC ACA GGA TGC TAC CGC ATC ATG AGT CTG CAG CAG AGC CGG CAG GTT CTG GAG GTT CTG CAG GAG GCG TTC TCC GCC GTC ATC TTC TAC CTG CAG CAG GTG GAG TCC GAC CGC TTC TCC GAC CCG TTT GTG CTG GCG ACG TTC CGG GCG CTC TGC GCC TGG CTG GCC GAG GAG ACT TCC TGT CTG AAG GAG GAA GTG ACC GCT CTG CTG CCC TTC CTG ATT GGC TAT GCC CGG CGC CAC CTG GAG CCG AGC CTC TCT GAT TGG GCT CTC AGG TAC CTG CTA CCT GCC CTG TGC CAC CTG TCG GCG GAG GAC GCC CCC AGG AAG GTG CTG CTC AGC GTG GAC GCC CCG GCG CTG TTG GTG GAC TTC CTG ATC CGG ACC TGG ACC GAC GAC CCC AGC ATG GAG ACG GCG TGC TCC GCC CTC CTG AAC GTG ATG GTG ACG GAG CCG GAC AGC GTC AGG AAG GAT CTG TGT TTC AGA GCC CTG GAG GTC CAC CTG AGT GAA GCA CTT CCT GTT AAT AAG CCC CGC CTC CTG GTC CTA GCA GCC AAT TAC TGC ACT CTG GGG CTG ATG ATT GGC CGG 
PFO                             GGC CCG GAG CGG CTC CTG GCC CAG GGC GCG GTA CCG GCC CTG TGC CGG AGG GCG CTG TCG CTG CTG GGC TGC CTG CTG AGA ACC AGA GAG GAA GCC TGG CGC AGA CAC CCG GCA GAA CTC CTC TCT CTG CTC CTC GGG CTC TGC TCG GAG TTC TGC CGG GCC TCG GAC CCG ACC CGG CTC CAG ATG TGC ACC CAG CTG GTG CGG TTC CTG CCG GAG GCA GTG GGC TGG GCG GCG CTG AGA CCC ACG CTG CAG GCC AAG CTG ACG CCC AAA CAG ATT GGG CCG GTT CTG GTT CTG AGC GCC TGC TTA CTG GAC CTG TAT GGC TGG GAG TCG GTG TTC TGC TGC CTG CTG GTG AAC CGG GCC TGC GTG GAG GTC CGG ATG GGC CTG GGG AAC ACA GGA TGC TAC CGC ATC ATG AGT CTG CAG CAG AGC CGG CAG GTT CTG GAG GTT CTG CAG GAG GCG TTC TCC GCC GTC ATC TTC TAC CTG CAG CAG GTG GAG CCT GAC CGC TTC TCC GAC CCG TTT GTG CTG GCG ACG TTC CGG GCG CTC TGC GCC TGG CTG GCC GAG GAG ACT TCC TGT CTG AAG GAG GAA GTG ACC GCA CTG CTG CCC TTC CTG ATT GGC TAC GCC CGG TGC CAC CTG GAG CCA AGC CTC TCT GAT TGG GCT CTC AGG TAC CTG CTG CCC GCC CTG TGC CAC CTG TCG GCT GAG GAC ACC CCC AGG AAG GTG CTG CTC AGC GTG GAT GCC CCG GCG CTG CTG GTG GAC TTC CTG ATC CGG ACC TGG ACC GAC GAC CCC AGC ATG GAG ACG GCG TGC TCC GCC CTC CTG AAC GTG ACG GTG ACG GAG CCA GAC AGC GTC AGG AAG GAT CCG TGT TTC AGA ACC CTG GAG GCC CAC CTG AGT GAA GCA CTT CCT GTT AAT AAG CCC CGC CTC CTG GTT CTA GCA GCC AAT TAC TGC ACT CTG GGG CTG ATG ATT GGC CGG 
OLA                             GGT CCG GAG CTG CTC CTG AGC AGG GGG GCC GTC CCC GCT CTG TGC CAG CGG GGC CTA CCC CTG CTG GGC CAC CTC CTC AAA ACC AAG AAG AAG GTT TGG AAT AAA CAC CCA GCA GAG CTC CTC GCC TTG CTG CTC AGA CTT TCC ACT GAC TTC TGC CGG GCC TCA GAA CCA AAC CGG CTC AGC TCG TGT GCC CAG CTG GCG CAG TTC CTG CCC GAT GCC ATG AGC TGG GAG CAG TTG AGA CCC ATG CTG CAG TCC AGG CTA ACT CCC AGA CAG ATC GGG CCC ATC CTG GTG CTC TGC GCT TGC CTG CTG GAT TTG TAC GGC TGG GAC CAG GCG TTC TGC TGC CTG CTG GTG AAC CGG GCT TGC GTG GAG GTT CGG ATG GGT TTG GGG AAC ACA GGC TGC TAC AGG ATC TTG AGC CTG CAG CAG AGC CGG CAG GTC CTG CAG GTT CTC GAG GAG GCC TTC TCT GCC GTC ATG TTC TAC CTG CAG CAG GTG GAT GCC AGT CGT TAT GGC GAC CCA TTT GTT TTC GCC TCC TTC CGC TCC CTG TGC TCC TGG CTG GCT GAG GAG ACT TCC TGT TTG AAG CAG GAA GTG ATA GAT CTG CTG CCG TTC CTG GTC GGG TAC GCA CGG CAC CAC CTG GAG CAG AGC CTT TCT GAC TGG GCT CTG AGG TAC CTC CTC CCA GCT CTG TGC CAC CTG TCG GCA GAA GAC GCT CCG AGG AAG GTT CTC CTC GGC CTG GAG GCT CAC AGC CTG CTG GTG GAT TTC CTG AAA CAG AGC TGG ACA TCC GAT CCC AGC CTG GAG ACC GCA TGC TCC ACC CTC CTC AAC TTT GCC GTC ACC GAA CCG GAG AGG GTC AGG ATG GAC CTC TGC TTC AGA ACC CTG GAG GCC CAT CTG AGT GAA GCA CTT CCT GTT AAT AAG CCC CGC CTC CTG GTC CTA GCA GCA AAT TAC TGC ACT CTG GGG CTG ATG ATT GGC AGG 
GAC                             GGT CCC GAC CAG CTG CTG AGC AGG GGG GCC GTT CCT GCC CTG TGC CAG AGG GGG CTC GCT CTG CTG GGT CGC CTC CTC AAA ACC AAG GAT AAA GTG TGG AGC ACA AAC CCG GAG GAA CTC CTC ACT CTG TTG GTC AGG CTC TCC AAA GAC TTC TGC CAA GCC ACA GGC CAG ACC AAG CTG GAC ATG TGC GCC CAG TTG GTG CAG TTC CTT CCA GGA GCC GTG GTC TGG GGG GCG TTG AGA CCC ATG TTG CAG GCC AAG TTG ACG CCG AGA CAG ATC GGG CCG ATC CTG GTC CTC AGT GCC TGT CTG CTG GAT TTG CAC GGG TGG GAG CCG GTG TTC TGC TGC TTG CTG GTG AAC CGG GCC TGC GTG GAG GTC AGA ATG GGT TTG GGT AAC ACA GGC TGC TAC CGG ATC ATG AGT CTG CAG CAG AGC AGG CAG GTC CTC GGG GTG TTG GAG GAG GCC TTC TCC GCT TTA ATG TAC CAC CTG CAG CAG GTG GAG CCA AGT CGC TAC GGC GAC CCT TTT ATC TTT GCC ACG TTC CGC TCT CTG TGC TCA TGG CTG GCC GAG GAG ACC TCC TGT CTG AAG GAG GAG GTG ACG GGG CTG CTG CCG TTC CTG ATC GGC TAC TCC AGG AGC CAC CTG GAG GAG GGC CTC TCC GCC TGG GCT CTG AGG TAC CTC CTG CCA GCC CTT TGT CAC CTG TCC GCA GAG GAA GGT CCC AGG AAG GTG CTG CTC ACC CTC GAC ACC CCG GCC CTC CTG GTG GAC TTC CTG TCT CGG TGC TGG ACC GCC GAC CCC AGC ATG GAG ACG GCC TGC TCG GCC CTC CTC AAC TTC ACC GTC ACG GAG CCG GAG AGA GTC AGG AAG GAC CAG AGT TTC AGA ACT TTG GAG GCC CTT CTG AGT GAA GCA CTT CCT GTT CAC AAG CCC CGC CTC CTG GTC CTA GCA GCA AAT TTC TGC ACT TTG GGG CTG ATG ATC GGC AGA 
ONI                             GGC TCG GAG CTG CTC CTG AGC AGG GGC GCC ATC TCT GCT TTG TGC CAA AAG GGG CTC GCC TTG TTG GGC TCG CTC CTC AAA AAC AAG GAC AAA GCA TGG AGC AAA CAC ACT CCA GAG CTC CTC TCA CTG CTG GTC AGA CTC TCC AAA GAC TTC TGT GAA TCC ACA GAC GAG ACC AGG TTG GGT ATG TGT GGT CAG TTG GCG CAG TTT CTG CCC GCA GTC GTG GGC TGG GAG GTA CTG AGA CCC ATG GTG CAG GCT AAA TTG ACA CCG AGA CAT ATC GGA CCA ATC CTG GTC CTC AGT GCT TGC CTG CTG GAT TTA TAT GGC TGG GAG ATG GCG TTC TGT TGC TTA CTG GTG AAC CGG GCC TGC GTG GAG GTC AGA ATG GGT TTG GGT AAT ACA GGC TGT TAC CGA ATC ATG AGT CTG CAG CAG AGC AGG CAG GTC CTC GGG GTC CTG GAG GAG GCC TTC TCT GGC TTG ATG TAC TTC CTG CAG CAG GTG GAG CCG AGC CGC TAT GGC GAC CCT TTC GTT TTC GCC ACA TTC CGC TCT CTG TGC TCG TGG TTG GCT GAG GAG ACT TCC TGT CTT AAG GAG GAA GTG ACT AGA CTC CTG CCA TTT CTG ATC AAC TAC ACC CGA AGC CAC CTG GAG CAG AGC CTC GCT GAC TGG GCT CTC AGG TAT CTC CTC CCA GCT CTG TGC CAC CTG TCA GCA GAG GAA GGT CCC AGG AAG GTG TTG CTC GAT GTC GAC ACT CCG GCC CTG CTG GTG GAC TTC CTG TCT CAG AGC TGG ACT TTC GAT CCC AGC ATG GAG ACG GCC TGC TCT GCG TTG CTC AAC TTC ACT GTT ACA GAG CCA GAG AGA GTC AGA AAG GAC TTG TGT TTC AGA AGC CTC GAG GTC CTT CTG AGT GAA GCA CTC CCC CTC AAT AAG CCC CGC CTC CTG GTC CTA ACA GCA AAT TGC TGC ACT CTG GGA CTC ATG ATT GGC AGA 
TRU                             GGT CCT GAC CAG CTC CTG AGC AGA GGT GCC ATA CCT GCT TTG TGC CAG AAG GGG CTT GCC TTG CTC TGC TGC CTG TTG ACC ATA AAA GAC AAA ATA TGG AGT AAG CAC TCT GCA CAA CTA CTG TCT CTG TTG GTC GAT CTT TCT AAA GAC TTC TGT CAA GCC AGA GAT GAG GAC AGA CTG GAC AAG TGT GCT GAG TTG GTC CAC TTC CTC CCC GGA GCT GTG GTC TGG GCG GCG CTG AGA CCC ATG TTG CAG TCA AAA CTG ACA CCA AGA CAG ATC GGA CCA GTC TTG GTT CTC AGT GCT TGT CTG CTG GAT TTG TTT GGA TGG GAG CCG GTG TTC TGC TGC TTA CTG GTG AAC AGG GCT TGT GTG GAG GTC AGA ATG GGT TTG GGT CAC ACA GGC TGC TAT CGC ATC ATG ACC CTG CAG CAG AGC CGG CAG GTC CTG GGG GTC TTG GAG GAG GCC TTC TCT GCC CAG ATC TAC CAC CTG CAG CAG GTA GAG CCA AGC GGC TAT GCT GAC CCT TTT ATC TTT GCC ACA TTC CGA TGT CTG TGC TCT TGG TTG GCT GAG GAG ACT TCC TGT CTG AAG GAG GAA GTA ATT AGA CTG CTG CCA TTT CTG ATC GGA TAC TCT CGC AGC CAC TTG GAG CAG GGC GTC TCA GAC TGG GCC CTT AGG TAC CTC CTC CCA GCT CTG TGT CAC TTG TCA GCA GAA GAA GGT CCA AGG AAA GTG CTG CTC ACT CTA GAC ACC CAA GCC CTG CTG GTG GAC TTC CTG TCA AAG TGT TGG ACG TTA GAT CCC AGC ATG GAG ACG GCC TGT TCT GTT CTG CTC AAC TTG GCT GTC ACG GAG CCA GAG AGA GTC CGG GAA GAT CCA TCC TTC AAA GCG CTG GAG GAC CTT CTG AGT GAA GCA CTT CCT GTT CAC AAG CCC TGT CTG CAG GTC ATT GGA GCA AAC TTC TGC ACG TTG GGT CTG ATG ATC GGT AGA 
TNI                             GGT CCC GAG CAG CTC CTG AGC AGA GGC GCC GTA CCT GCG CTG TGC CGG AGG GCC CTG GGC CTG CTC GGC TGC CTC CTG AGG CTC AAA GAC AAG CTG TGG AGC AAA CAC CCC GCG GAA CTG CTG TCG GTC TTC CTG CGG CTG TCC AGA GAC TTC TGC GGG GCC AGC AGC GAG GAC CGG CTG GAC CGC TGC GCC CGG CTG GCG CTC TTC CTG CCC GGG GCC GTG GTC TGG GCG GCG CTC AGG CCC ATG CTG CAG TCC AAG CTG ACA GCC AGG CAG ATG GGC CCG CTC CTG GTG CTC AGT GCC TGC CTG CTG GAC CTG TTT GGG TGG GAG CTG GTG TTC TGC TGC CTG CTG GTG AAC AGG GCT TGT GTG GAG GTC AGG ATG GGC CTG GGT CAC CCA GGC TGT TAC CGT ATC ATG ACG CTG CAG CAG AGC CGG CAG GTC CTG GGG GTC CTG GAG GAG GCC TTC TCC GCC CAG ATC TAC CAC CTG CAG CAG GTG GAT CCC AGC GGC TAC GCC GAC CCT TTC GTC TTC GCC ACC TTC CGG TGT CTG TGC TCC TGG CTG GCC GAG GAG ACG TCC AGT CTG AGG GAC CAG GTG ACT CCT CTG CTG CCC TTT CTC ATC GGG TAC TCG CGC AGC CAC ATG GAG CAG GAC GTG CGG GGC TGG GCC CTC CGG TAC CTC CTC CCG GCT CTG TGT CAC CTG TCG GCA GAA GAG GGT CCA AGG AAG GCG CTG CTC GGC CTG GAC GCC CAG GGC CTG CTG GTG GAC TTC CTG TCC CGG AGC TGG ACG TCG GAC CCC AGC ATG GAG ACG GCC TGT TCG GTC CTG CTC AAC GTG GTG GTC ACG GAG CCG CAG AGG GTC CCG GAG GAG CCT GCG TTC GGG GTG CTG GAG GAC CTC CTG GCG GAA GCC CTC CCG GTG CAC AAG CCC GGG CTG CTG GTC CTG GCA GCC AAC TTC TGC ACG CTG GGG CTC ATG ATG GCC AGG 
GMO                             GGC CCC GAG CAG CTG TTG AGC CGG GGG GCT GTA CCC ACC CTG TGC AGA AAG GGG CTT CCC CTG CTG GGC TGC CTG CTG CGG TCC CGG GAG AAG GCG TGG CGG AAA CAC CCG GAG CTG CTC CTC TCC CTG CTG GCC CGC GTC TCG GCC CAC TTC CGC CAG GCC CAG GGC CAG GCC CGG CTG GAC CAG TGC TCC CGG CTG ATG CAG TTC CTG CCT GCG GTG GTG GGC TGG GAG GAG CTG AGG CCC ATG ACG CAG GCC AGG CTC ACG CCC GCG CAG ATC GGC CCC CTC CTG GTG CTC AGC GCC TGT CTG CTG GAC CTG GGC GGC TGG GAG CCG GCG TTC TGC TGC CTG CTG GTG AAC CGG GCC TGT GTG GAG GTG AGG ATG GGT CTG GGG ACG ACA GGC TGC TAC CGC ATC ATG AGC CTG CAG CAG AGC CGG CAG GTC CTG CTG GTG CTC CAG GAG GCC TTC GCT GCT CTG ATA TAC CAC TTG TCA CAG GTG GAC CCC AGT CGC TAT GGC GAC CCG TTT GTG TTC GCC ACG TTC CGC TCG CTG TGC GCC TGG CTG GCC GAG GAG ACG GCC TGT CTG AAG GAG GAG GTG ACC GCC CTC CTG CCG TTC CTG ATT GGC TAC GCC AGG GCC CAT CTG GAC CAG AGC CTC TCC CAT TGG GCG CTG AGG TAC CTC CTG CCG GCC CTG TGC CAC CTC TCG GCG GAG GAC GGG CCC CGG AAG GTT CTC CTC TCC CTG GAG GCC CCG GCC CTG CTG GTG GAG TTC GTG TCG CGG GGG TGG GCC CGT GAC CCC GGC CTG GAG ACG GCC TGC TCC GCC CTG CTC AAC TTC ACC GTC ACG GAG CCC GAC AGC GTC AGG AAT GAC CCG TGC TTT AGG ACC CTG GAG ACT CTC CTC AGC GAA GCA CTT CCT GTT CAC AAG CCC GCC CTC CTC GTC CTC GCT GCC AAC CTC TGC ACT CTG GGC CTC ATG ATT GGC CGG 
AME                             GGC CCT GAT CAG CTG CTG TCT CGT GGT GCT GTA CCT GCT CTG TGC AGG AAA GGT CTT CCA CTT TTG GCT CAC CTT CTG AAT ATT AGG GAG CGG GTG TGG AGC AAA CAC CAA TCA GAA CTT CTT TCT CTT CTT GCT ACC ATC TCC CAG AAC TTC AGT CAA GCT CCA AAC CAG GAT CGC CTG GAC TTG TGC TCT TCT GTA CCA CAG TTC CTC CCT GAT TCA GTG TCC TGG GCA TCA TTA CGT CCA CTG GTC CAA GGT AAA CTC AGC ATA GAT CAT CTG GGG CCA GTT CTG GTG CTG TCT GCT TGT TTG CTG GAC TTG TGT GGC TGG GAG CCG ACT TTC TGC TGT CTG TTG GTA AAT CGG GCA TGT GTG GAA GTG AGG ATG CTT CTG GGT ACT ACT GCC TGT TAC CGC ATC ATG AGT CTG CAG CAG AGC AGG CAG GTC CTT GGA GTT CTG GAG GAG GCG TTC TCT GCT GTT ATT TAC TAC CTG CAG CAG GTT GAC TCA AGC TCA TAT GAT GAT CCC TTC CTC TTT GCC ACT TTC CGC TCC CTC TGC GCC TGG CTG GCT GAA GAG ACT TCA TGT CTA AAG GAG GAG GTC ATT GCC CTT CTG CCT TTT CTC ATT GGC TAT GCC AAA CAC CAC CTG GAC AAA GGT CTT GCT GAC TGG GCC CTG AGA TAT CTC CTC CCA GCA CTC TGC CAC TTG TCA GCT GAA GAG GGT CCC AGA AAG GTG CTT CTT TCT CTG GAT ACT CCA GCT CTG CTG GTG CAC TTT CTT AAC CGG GGC TGG GAA GTG GAC CCT AGC CTG GAA ACG GCC TGC TCT TCC CTT CTC AAC TTT GCT GTT ACA GAA CCA GAC AGA GTC AGG ACT GAT TCT TGC TTT GCT TCT CTT GAG GCA ATG CTA AGT GAA GCG CTT CCG GTA CAT AAG ACT CGC CTC CTG GTC CTG GCA GCC AAT TGC TGC ATT CTG GGT CTC ATG ATT GGA AGA 
DRE                             GGC CCC GAG CAG CTC CTG TCC CGC GGG GCC GTT CCA GCG TTA TGC AGA AAA GCC CTT CCG CTG CTG GGA CGC CTG CTG GGA GTC AGG ACT CAG AGT TGG AAT AAG CAC TCA TCT GAA CTT CTT TTA CTC CTA AGA AAC ATT TCA CAA GAT TTC AGC GAA GCT TCA AAT GAG GCT CGA TTG GAG ATG TGC TCT CAG ATA CCG CTG TTT CTT CCT GAG ATC GTG GGA TGG GCT TCG TTG AGG CCT TTG GTT CAA GGG AAG ATC AAG CAA GAG CAT TTA GGT GCA GTT TTA GTG TTA TCC GCG TGT CTT CTG GAT CTG TTT GGA TGG GAG TCT GTG TTC TGC TGT TTG CTG GTG AAC CGG GCG TGT GTG GAG GTG AGG ATG GGT TTG GGG ACT ACA GCC TGC TAT CGG ATC ATG AGC CTC CAG CAG AGC AGG CAG GTC CTC GGA GCT CTG GAG GAG GCC TTT TCT GCT GAA ATA TAC TAT CTC AAA CAG GTG GAA GAG GCG AGT TAT GAT GAT CCG TTT GTT TTC GCC ACT TTC CGC TGT CTC TGT GCT TGG CTT GCT GAG GAA ACC TCC TGT CTG AAG GAC GAC GTT ATT AAA CTC CTG CCT TTT TTA ATC GGC TAT GCT AAA ACT CAC TTT GAA AAG GGT CTC GCT GAG TGG GCT CTT CGG TAC CTG CTG CCG GCG CTG TGC CAC CTG TCG GCT GAA GAT GAG CCG CGG CGG GAG CTT CTG TGT CTG GAC GCT CCT GCT CTG CTG GTG GAG TTT CTG AGC TCC GGA TGG GAC ACG GAG CCC AGT CTG GAG ACC TGC TGC TCC GCT TTA CTC AAC TTC ACC ATC ACA GAG CCG CAG CGA GTC AGG TCG GAT CCG TGT TTC GTG GCT CTG GAG GTT TTG TTG AGT GAA GCT CTG CCT GTT CAT AAG CCA TGG CTC CAG GTT TTA GCC GCT TAC TGT TGC ACT CTG GGC CTC ATG ATT AGC AGA 
LOC                             GGC CCG GCA GTC CTG CTG TCC CGG GGA GCG GTG CCG GCG CTG TGT CAG AGA GCT CTG CCT CTG CTG GGA CAG CTG CTT CCA ACC AGA ACT GCA GCC TGG CAG AAA CAC GCA GCG CAG CTG TCA GAT CTG CTG GCT CGG CGG GTC CAG GAG TTC TGC CAG GCT CCG GAT CTG CAC AGG GTC GAA CTG TGT GCC GGG CTA CTG CAG TTC CTG CCC GAG AGT GTG ACT TGG GGG GGC CTG CGG CCT CTG ATC CAG GCC CGC ATC AGC CCA GCC CAG CTA GGC TCT GTC CTG GTT CTG TCC GCT TGC ATG CTG GAC CTG TGT GGC TGG GCC CCA CTG ATC AGC TGC CTG CTG GTC AAC CGA GCC TGT GTT GAG ATC CGA ATG GGC CTG GGC ACT ACC GCC TGC TAC CGC ATC CTG AGT CGG CAG CAG AGC AGG CAG CTG TTC GGA GTC CTG GAA GAG GCC TTT TCT GCC ATC GTG TAC TAC CTG CAG CAG GTG ACC CCG AGT TGC TAT GGA GAC CCC TTC ATC TTC GCC ACT GTC CGT GCG CTG TGC GCC TGG CTG GCG GAG GAG ACG TCC TGC CTG AGA GAG GAA GTG ACC GCT CTG CTT CCC TTC CTG ATT GGC TAC GCC AGG GAG CAG CTG GAC CAG GGC CAG GCT GAC CGG GCC CTG AGG TTC CTT CTT CCC GCG CTG TGC CAC CTG ACT GCA GAG GAC GGG CCC AGG GGG GTG CTG CTG TCC CTT GGG ACG CCT GTC CTG CTC ACA GAC TTC CTG TCC CGT GGC TGG AAG AGG GAT CCC GGC ATG GAG ACG GCC TGC TCT GCC CTT CTG AAC ATC GTT GTG ACG GAG CCC AGC GCT GTC AGG ACA GAC GCC TGT TTC TCC TCT CTG CTG TCC CTG CTG ACG GAC GCG CTC TGC GCC CAC AAA CTC CAT CTG CTG GTG CTG GCT GCC AAT TTC TGC ACT CTG GGG CTC CTG ATT GGC CGA 
LCH                             GGA CGC CAG CAG CTT GTA TCC CAG GGG GGC GTG TCA GCC TTG TGC CGT CAA GCA CTG GGG ATC CTG AGT GGA ATT CTG ACA GCG ATG GCC AAA TGC TGG AAG AAA AGC ATG TCT GAC CTA CTG GCA TTA CTA GGC ACG CTC AGT AAA GAG TTT TGC AAC ACA GAG GAT AAG AAG AAA TTT GAA CTT TGT GAG ATT TTG CCC CAT TTC TTG CCT GAG TGC TTT CAG TAC ACT GGA CTC TAC AGG ATC CTG AAC AGT AAG CTC AGC GCC TCC CAG AGT GAG CCA GCG CTA AAA CTG GCC GGG TGT CTT ATC GCT AGC TAC GGC TGG ATC CTA GCG TTC CTG GCG CTG CTC ATA AAC CTG GCC TGC GTA GAA GTT AGA CTG TGT CTA GAG GGA GCA GCG TGC TAT AGT ATC GTT GGA ATG ATG CAG TGC ACC CAG TTA GTG AGA ATC ATG GCT GAG GCA TTT GGA GCT ATT ATT CAT TAT CTG AAG CAG GTG GGA CCG GAC AAG GTG CAG GAT TCC TTT GTG TTT CTT TCT GTT CGA CTT CTC AGT GCT TGG CTA GCG GAG GAG ACT GCA TCT CTG AAA GAG GCC ATC TGC GAC CTT CTG CCT TTC CTA ATT CAG TAC ACA AAA GCG CTT TTC TCG GGT GAC GTG TCC AGT TGG GCT CTA AGG TTG CTT CTT CCT GGT TTG TGC CAC CTG ACC GCA GAA GAA GGG CCA CGG AGG ATT CTG ATC TCT GAA GGA GCC CCA GCA CTC CTG CTG CAG TAT TTC ACC CAT CAG TGG GAT GTG GAA ATG AGT CTG CGG ACC TCC TGT GGA ATC TTC CTC AAC TTT GTA GTG ACA GAA CCA GAC TTG ATT AGG AAG GAA GAA GCA TTT TCA TCC TTG CTG AGT CTA TTG ATG TCA TCC CTC CCG TCT CAC AGC AGA AAG CAG TGT ATC CTC GCA GCC AAC TTT GTC ACC CTC GGA TTA ATG CTG AGT AGA 



Printing out site pattern counts


        12        945  P

XMA                             AAA AAA AAC AAC AAC AAG AAG AAG AAG AAG AAT AAT ACA ACC ACC ACC ACC ACC ACG ACG ACG ACG ACG ACT ACT AGA AGA AGA AGA AGC AGC AGC AGC AGC AGG AGG AGG AGG AGG AGT AGT AGT ATC ATC ATC ATC ATG ATG ATG ATG ATG ATG ATT ATT CAC CAC CAC CAC CAG CAG CAG CAG CAG CAG CAG CAG CAG CCA CCC CCC CCC CCC CCC CCC CCG CCG CCG CCG CCG CCG CCG CCG CCT CCT CGA CGC CGC CGC CGC CGC CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CGG CTA CTA CTA CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTG CTT GAA GAA GAA GAA GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAG GAT GAT GCA GCA GCA GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCC GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCG GCT GCT GGA GGC GGC GGC GGC GGC GGC GGC GGG GGG GGG GGT GTC GTC GTC GTC GTC GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG GTT GTT GTT GTT GTT TAC TAC TAC TAC TAT TAT TCC TCC TCC TCC TCC TCG TCG TCG TCG TCG TCT TCT TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGG TGG TGG TGT TGT TTA TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTG TTG TTT 
PFO                             ... .G. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... G.. ..C ... ... ... ... ... ..T .C. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... .C. ..G ... ... ... ... ... ... ..A ..A ... ... ... ... ... ... ..C ... ..G ... ... ... ... T.. .A. ... ... ... ... ... ... ... ... ... ... ... ... ..G ..G ... ... ... ... ... ... ... ... ... ... ... ... .C. ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.. A.. A.. ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..A ... ... ... ... ... ... ... ... ... ..T ..A ... ... ... ... ... ... ... ... ... ... ... ... ..C .C. ... ... ... ..T ..A ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..C ... C.T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... C.. C.. ... 
OLA                             .G. ... ... ... ... ... ... ... .G. .T. ... ... ... .A. ..A ... .G. .TA ..C ..C ..T .T. T.C ... ... .A. .AG ... ... ... ... ... ..G G.. ... ... ... C.. ..A T.C ..C ... .AA ... ..G ... GCC ... ... C.. TC. T.. ... G.C ... ... ... ..T AGC ... ... ... ... ... ... G.. .CA ... ... ... ... ... ..G ..G .A. ... .AC ..A ..C ..C ..C ... ..A ... .TG AAT A.G ... ..T .A. A.. A.. .A. .A. .A. ..C ... ... ... ... ... ... ... ..C ..C ... ... ... ... ... ... ... ... ..G ..G ..T ..T ..C ... ..A ..A ..C ..C ..C ..C ..C ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... T.C T.. T.. T.. T.. T.. ... A.G ... ... ..G AGT ..A ... ... ..G ..T ..T ..T TC. ..G A.. C.. C.. ..A ..A ..C ..C ... ... ... ... ... ... ... ... ..T ..T ..C ..C ... ... ... A.. ... ..T A.. AG. ..A ..A ... ... ..T ..T ..T ..T ..T ..T .TT T.. T.. ..C AGC CA. .A. ..A ..C ..C ..C .GC T.C ..A .A. ... ..C A.. ... ... ... ..G ..G ..T ... ... ... ... .C. ... ... ..T ... ..C A.. C.. .C. .C. ..C ... ... ... ... ... ..T ..T T.T A.C ..C ..G ... ... ... ... ... ... ..C ..C G.. GG. ... ... ..T A.T CA. C.C ..A ... G.C ... CA. .C. ... ... ... ... ... ... ... ... ... ... ... ..T ... ... ... ..C ... C.G .AT ... ... ... ... ... ... ... ... ... C.. C.. ... 
GAC                             .G. .C. ... ... ... ... ... ... ... ... ... C.C ... ... ... ... TG. ..G ... ... ... .T. ... ..C ... .A. .AG ... ... ... ... G.. ..A .C. ... ... ... ... ... ... ... ... TCT ... ..G ... .CC ... ... ... ... ... ..C ..C A.. ... ... .TT G.C ... ... ... ... ... ... G.. ... ..G ... ... ... ..G ... ..G GA. ... ... ..T ..A ... ..T ..C ..A ... .AG A.. ..G ... ... A.. A.. A.A .A. .A. ... ..C AA. A.A A.. A.. .AA ... ... ..C ..G ... ... ... ... ... ..G ..G G.. ..G ..G ... ... .A. T.. ..C T.. ..C ..C ..C ..C ... T.. ..C ..C ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ..T ..T T.. T.. T.. T.. T.. T.T ... ... T.. T.. T.. ... A.. ... ..G ... AGT .G. ..A ... ..G ... ... ..T .C. ... ..T ... .G. ... ... ..C ... ..C ... ... ... ... ... ... ... ... .GA ..C .CC .AG ... ... A.T ... .GT ... AG. ..A T.. ... ..T A.. ... ... ... ... ... .TG ... T.A ..C ..C ... .G. ..C ..C ..C ..C .G. T.T ..A .GG ... ..C .T. ... ..G ..T ... ..G ..T ... ... ..T ... .C. ... T.A ... ... ..T ... C.C ... ... ..C ... ... ... ... ... A.C ... T.C A.C ..C ..C ..G ... C.. ... ... .T. ..C C.C C.A GG. ... ..G ... AAA C.. G.T A.A ..C A.. ..C C.. .C. ... ... ... ... ... ... ... ... ... ..T ..T ... ... ... ... A.. ... C.G .A. .A. ... ... ... ... ... ... ... ... C.. C.. ... 
ONI                             .G. ... ... ... ..T ... ... ... ..A ... ... ... ... ... ..T .A. .G. ..T ..A ... ..A .T. ..A ... ... .A. .AG ... ... ... ... ... ..A GAT ..A ... ... .A. ..A ... ... ... TCT ... ..G ... .CT ... ... ... ... ... ... ..C ... ... ... .TT GGT ... ... ... ... ... ..T G.. G.. A.T ... ... ... ..G ... ..A .A. ..A ... ..T ..C ..A T.T T.. ..A ..C .TG A.. ..A ... ... A.. A.. A.A .AA .A. .A. ..C A.. A.A A.. ..A GAA ... ... ..C ..C ... ... ... ... T.G ... T.G G.. ... ..G ... ... T.. ... ..C T.. ..C ..C ..C ..C T.. ... ..C ... ..C ..C ... ... ... ... ... ... ... ... ... ... ... ... T.. T.. T.. T.. ... ... ..C ... G.. T.A T.. T.C ... ..T ... T.A T.. ..C A.. ... ... ..G AG. ... ..A ... ..G ... ..T ..T TT. ... ..C ... .G. ... ... ..C ... ... ... ... ... ... ... ... ... ... .CA ..C ..C C.. A.. ... AG. .GT .GT ..G AG. ..A A.. T.. .G. A.T ... ..T ..T ..T ..T ..A ..T T.G .TC ..C .TA .A. ..C ..C ..C ..C .G. T.T ..A AGA ... ..C ... ... ... ... AA. ... ... ..A ..A ..T ... ... ... T.G ... ... A.C ... ..C .C. .C. ..T ... ... ... ... ... ..T ... T.C A.C ..C ..C ..C C.C .T. ... ..T .G. ..C ... C.G GG. ... ..T ..T AAA AT. G.C A.A ..A ..A G.. .CG .C. ... ... ... ... ... ... ..T ..T ..T ... ... ..T ... ... ... ... ... C.G .AT .A. ... ... ... ... ... ... ..T ..T C.. C.. ..C 
TRU                             .G. ..G ... ... C.. ..A ... ... ..A G.A ..C C.C ... GA. ..G .TA TGT .TT ... ... ..A .T. ..A ... ..G .CC .A. .A. ... ... ... G.. ..A .CT C.. ... ... .A. GAT ... .CC ... TCA ... ... ... GCT ... ... ... .A. ... ..C ..C ... ... ... .TT G.C ... ... ... ... G.. ... G.. G.. T.T ... ... ... ..A ..A ..A .A. ..A .AA ..T ..C ..A ..T ..T ..A ... .AG A.T ... T.T G.. A.. A.A A.A .A. .AC AA. ..A A.A A.A ... ..C .AA A.. A.T ..C ..C ..A ... ..G ..G ..G ... ..G G.. ..T ..G ..T G.. .CA T.. ..T ... ..C ..C ... T.. ... T.. ... ... ... ... .A. ... ... ... ... ... ... ... ... T.. T.. T.. ..C T.. T.. T.. ..C ... ... T.. T.. T.A T.. T.T ... ... ... T.. T.. ... A.. ... ... C.. AG. ..T ..A ... ..G ... ..T ..T TTA ... ..C ... .G. ..A ... ..C ... ..C ... ... ... ... ... ... ... ... .GA ... ..C ... .G. ... ..G ..T .GT .TT AG. ..A T.T ... ... A.. ..T ..T ..T ..T ..T ATA T.A T.T ..T ..C ... ... ..C ..C ..C ..C .G. TGT ..A AGA ..C ..C .T. ..T ..A T.. ..A ..T ..T ..A ..T ..T ... .A. ... CAG ... ... A.A ... C.A ..C ... ..C ..A ..A ... ... ... A.C ... T.. ..C ..C ... ..C ... C.. ..T ... .T. ..C .T. C.A G.T ... ..T ..T AAA C.. G.C AGA ..A ... ..A ... .CT ... ... ... ... ..T ..T ... ... ..T ..T ..T ..T ... ... ... .CC ... C.G .AT .A. ... ... ... ... ... ... ... ..T C.. C.. ... 
TNI                             .GG ... ... ... C.. ... ... .G. ... G.. ..C C.C C.. GA. ..G CT. .G. ..T ... ... ..A .T. ..C ..G ..G ..G .A. G.G ..G ... ... GA. ..G G.. CC. ... C.. ... C.. ... .CG GCG TC. ... ... ..G G.. ... ... ... CGC ... ..G ..C ... ... ... .T. G.C ... ... ... ... .G. ... G.. G.. ..C ... ... ... G.. ..A ... .A. ... .A. ..T ..C ... ..T ..C ..G ..G .AG A.. ..T G.G G.. A.. A.A A.. ... .TC ... ... ... A.. ... ..C G.. A.. ..G ..C ..C ..G ... ..G ..G ..G ... ..G ..G ... ..G ..G G.G .CT T.C ... ... ..C ..C ..C ... ... ... ... ... ..C ... ... ..C ... ... ... ... ... ... ... A.. ... ... ..C ... ... ... ... ... ... ... ... ... ... T.C G.C ... ..C ... ... ..C A.G ... C.G ... AG. AG. ..G ... C.G ... ... ... TCG ... ..C ..C .G. ..A ... ..C ... ... ... ... ... ... ... ... ... ..T .G. ..G .GC ..G ... ..C .TG ... .GT .T. AG. ... T.G ... ... ... ..T ... ... ..G ..T CTG T.. T.. ..C .GC ... ... ..C ..C ..C ..C ..C TGT ..A C.. ..C ..C .T. .C. ..G ... ..G ... ..T ..C ... ..T ..C .A. ... CAG ... ... ..A ... C.. .C. ... ..C ... ... ... ... ... ..C .C. ... C.C ..C ..G ..C ..G C.. ... ... .T. ..C .T. C.. G.. ... ..G ... AGA CT. GGC AGC ... ..G CGG ... .C. ... ... ... ... ..T ..T ... ..T ... ... ..T ... ... ... ... GCG A.. C.G .A. .A. ... ... ... ... ... ... ... ..T C.. C.. ..C 
GMO                             GCG ... ... ... .CG ... ... ... .G. ..T ..C C.C ... G.. G.. T.. GGG ... ... ... ... .T. ... ..G ... C.G C.G ..G ..G ... G.. ... ... TC. ... C.. ... .A. C.C ..C ..C ..C TCG ... ..A ... .CC ... ... C.. CA. ... ... ... ... ... ..T .T. G.C ... ... ... TCA .G. ... ... ... ..G ... ... ... ... ... ..G .A. ..C ... ... ..T ..C ..C ..C ..G ... .AG ..G ... GC. ... GC. ... ... A.A .A. ... ..C ... A.. ... A.. .A. ... ..C ..C ..G ... ... ... ... ..G ..G ..G GC. ..G ..G G.. ... .C. ... ..T ..C ..C ..C ... ... ..C ..C ... ... ..C ..C ..C ... ..C ... ... ... G.. T.. T.. ... ..C ... ... ... ... ... ... ... ... ... AC. ... ... T.C ... ... ... ... ... ... A.G ... ..G CTG AGT .G. ... ... ... ..G ... ... CGT ..G ... ... CT. ... ... C.C ... ... ..C ... ... ... ... ... ... ..C .C. ..C C.. .AG ..T ... A.. T.. .GG ... AG. ... ... ... ..T ... ... ... ... A.. ... ..G ... ... .T. ..C .A. .A. ..C ..C ..C ..T .G. T.. ... ..C ..G ..C ... ... ... ... ... ..G ... ..C ..C ... ... ACT ... C.G ..G ... ..A ... C.. A.. .C. ..C ... ... ... ... ... ... ..T T.C C.C ..C ..G ..G ... C.. ... ... CT. ..C GGC C.. GG. G.. ... G.T G.C C.. C.C CA. ... ..C ..C ... .CG ... ... ... ... ... ..T ... ... C.. ..T ... ... ... ... ... ..C ... C.G .AT .A. ... ... ... ... ... ..T ... ... C.. C.. ... 
AME                             G.T ... ... ..T .CT ... ... ... ..A .CT ... C.. ..T GAT GAA .TT GG. .TT ..A ... .GC CT. ..T ... .T. .AT ..G GCT C.T ... ... G.T ..A TCT ... ..A ..A .AA .CC TC. ... ... .A. ... ..T C.G GCT ... ... C.. T.. ... ... ... ... ... ... ATG G.C ..A ... ... ... TCT ..T G.. ... .A. A.T ..A ..T ATA ... ..T AAA ..A ..A ..C ..T ..A ..T ..T ..A ..G .AG A.. ... ... TCA .A. ..T A.A A.. .A. ... ..C ..C A.. A.. AAA .AA ... ..G ..G ..C ..T ..T ... ..T ..T ..G ..G GCT ..G ... A.. ..T TCT ..T ..T ..C ..C ..C ..T ... ..T ... ..T ... ..C ..T ... ..C ..A ... ... T.. ..T ... ... ... T.. ... T.. ... ... ..T ..C ..C ..T ... G.C ... G.A T.T ..T ..A T.A T.. ... ... CGG ... ..G ... AG. A.. ..G ..T ... C.. ... ... .TG ..T ... ... .GA ..A ..A A.C ... ..T ..C ..A ..A ..A ... ... ... ..C ..T ... ..C T.. ... ..G T.T T.T .GT T.. T.T ... ... ..T ..T A.T ..A ..T ..T ..T ..A .TG .GT ... T.A ..T T.A ..A ..C ..C ... ..T .GT T.C ..T ..C ..C .CC TC. ..A ... .CT ... ..T ... ... ..T ..T CT. .CA ... ..T ..G ... ..A ... C.. CCA ACT ..T ..C ..T ..A ... ... C.C ... T.T ... ..C ..G ... ..A ... ... ..T .G. ... .G. ..A GAT ..A ..T ..T CA. C.. C.A C.A ..A ... G.. CA. .C. ... ... ... ..T ... ..T ... ..T A.T ..T ... ... ... ... ... ..C ... ..G .AT .A. ... ... ... ... ..T ..T ... ..T C.. C.. ..C 
DRE                             G.G ..G ... ... .CT CG. ... ... ... TC. T.C C.. ... G.T GA. GT. GGA .TT ..A ..C .A. TT. ..T ..C ... G.. ..G GTG ..G ... ..T G.T C.A T.T ... C.. C.. .AA .AC TCC ..C ... .G. ... ..A T.A .CC ... ... C.. ... ... ... ..C ... ... ... TTG G.. ..A ... ... A.A ... ..T G.. G.. T.. ..A ..T ... .AA ..G ..T AA. ... ..T ... ..T G.A ..A ..C ..G ... .AG AAT ..G T.G A.T ACT ..C A.A A.A .T. TCC ..C ..A A.. A.. AAA GAA ... T.. T.. ..G ..T ..G ... ..T T.A ... T.G AGA ..T ... A.T ... .C. ..A ..T A.C ..C ... ... ... ..T ... ..C ... ..C ..C .A. T.A T.. ..C ... ... ... ..C ... T.T ... T.A ... ..T T.A ... ..T ... ... ... G.T T.. A.A T.C ..C ... T.. ... T.. ..G C.G ... ..C ... .CG A.T ..T ..T C.G ..G ..G ..T ACG ... ACT ..C .GA ..A ... ..T ... ... ..A ... ... ... ..A ... ... ..A ... ... ..G T.T ..C ..T ..T T.T .AG ..T T.. ..T ..T ..T ..T ..T ..G ..G ..T ..G ..G AGT .GG ..T ATC ..T T.. ..T TGC ..C ..C ..C ..C TGT ..T AAA ... .CC ..A A.. ..A ..A ... ..G ... ..T ..C ... ... ..T ... .AA ..G ..T ..T ... C.. CC. ... A.C ..T ... ... ... ... ..T .A. T.C ... ..C ..G .C. ... ..T ..T ... .GT ... .T. GAG GAT ... ... ..T CAA ..T C.. ..A ... .TA G.. C.. .CA ... ... ..T ..T ... ..T ... ... A.. ..T ... ... ... ... ... ... ... C.T .AT .A. ... ... ... ..T ..T ... ..T ..T C.. C.. ... 
LOC                             GCC ... ... ... .CT GG. ..A .GA CGC .CA ... C.C ..C CA. .AG ... GG. ... ... ... .GC CT. ..T ..G ... CC. ... TCC C.G ... G.. G.. GCT TC. ... ... ... ..A C.. TCC ... .CG TC. ... G.G C.A G.T ... C.. ... C.. C.. ... ... ... ... ..G .TG G.A ... ... ... ... GG. ... G.A .T. G.. .T. ..T ... ..A ... ... .A. ..C ..T ..C ..C T.T ... ... ..C TGC GTC .AG ... .AT T.. GAG ... ..A .A. .A. ..T ..T A.. ..A A.. A.. .A. ..A ..G ..G ..T ..G ..G ..G TCA ..T ..G G.. GCT ..G ..G .GG .AG GCC ... ... A.C ... ..T ... ..T ... ... T.C ... ..C ... ... ... ... .G. ..T ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... A.C ... ..A T.C ... ... ... ... ... ..C .C. ..C ... C.G AGT ..T ... ... AG. ... ..T ... AGG .GG ACT ... .GA ... ... ... .CC .CA ..C ... ... ... ... CT. ... ACC ... ..C ..C ..G ..T ..G T.T ... .GG ... T.. ... ... ..T ... A.G ... ..T ..G ..G ..G ... ... ... AGT .TC .GC .G. ..C ..C ..C ... ..T ... ..A ... ..C .CC ACT ... ... ..A ... ..A ... ..C ... ..C ..C TC. ... A.. A.. ..G ... ... C.T C.. C.. ... ... ... ..C ACA ..T A.C ... A.C ..C C.G ... ..C .CC ... ... .T. .T. ..C .G. C.G GGA ... ..T ..T CA. C.A C.T C.. A.T GA. G.. CAG GT. ... ..T ... ... ... ..T A.. ... ... ... ... ..T C.. ... ... ... ..C A.G .AT .A. A.. G.. ... ..T ... ... ... ... C.C C.. ..C 
LCH                             TCC ... ... ... GGA .G. .GC ..A ... ... ..C C.C G.. .AG GAT G.G CAG TG. ..A ..C .GC .TC T.T ... ..C .C. .TG TC. TAC T.. ..T GA. TTG TCT ... C.. ... CAA .C. GCC G.A .TG .C. ... ..T .GT G.A C.. ... C.. C.T G.T C.G ... AG. ... .TT .TA G.A A.C AT. ... A.. ATT ... GCT A.. ATG AGA AGG ATG G.. ..A ..T GGT ..A ..A T.C ..T ..A T.A .GC ... ..G .AG AAG A.T AAG AAG GCG .A. A.A ..T .AT .AT ..A AAA A.A ACC AAA AAC .T. ..C ..G ..T ..A A.. .AG ..G T.. ..T T.T GG. ..A ... ... G.G GAA ..A ... ..C ..C ..T A.T ... ... A.. G.. ..C T.A ..T TGT ..A T.. A.. ... ..C T.C ... G.A T.C ... ..A ... ..A T.. A.C T.. T.. T.. ..C ... ... T.. T.T T.A ... ..C AGC ..A ..C A.. TC. .CC ..C ... ..T ..A ..T ... C.G ..A .CT .TG .GA .CC ... AGA ..A ..A ... ATC C.. TC. CG. ..A ... ... CT. ... .GA ... ..A AG. T.T ... T.C T.. .AG .GG AT. T.. ... A.A A.A ..T ... ... .GG ..G ... .GT TG. AGT ..T TGC ..A .GA A.T T.C CTT ..A .GC ..A CTT ..A .AC ... .CG CAG A.T ... A.T CAG ..G ..A .A. ..A .A. T.. AGT A.T A.T ..T A.. ... T.T .AA CCC .C. ... A.C ... A.A C.. ..A ... A.T T.T .CG T.A AAA A.C TC. ..T ..T .TG .TT ..C ..C C.G CAG G.A GGA GGA AAA CTA GG. GA. A.C G.A ..C G.A A.T GT. ... A.T GCG ..T ... CTG ... ... ..T ... ..T ... .AC ... GCA .C. C.T G.G CAT ... G.T ..T ..T .AT ..T ... ... C.. A.C ... 

    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    3    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    4    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1


CODONML (in paml version 4.9d, February 2017)  NCDN_MSA_cds_reordered.fa-gb_woOut.fa
Model: several dN/dS ratios for branches for branches,  omega = 1.000 fixed

Codon frequency model: F3x4
Site-class models:  PositiveSelection
ns =  12  ls = 320

Codon usage in sequences
--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   1   1   2   2   2   4 | Ser TCT   2   2   2   2   5   7 | Tyr TAT   2   1   1   0   3   2 | Cys TGT   2   2   2   3   6  10
    TTC  10  10  10  10  11   8 |     TCC   5   4   8   6   3   2 |     TAC   4   5   6   5   3   3 |     TGC  14  15  13  11   9   8
Leu TTA   1   1   0   1   2   2 |     TCA   0   0   1   1   2   4 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   2   0   6  11  12  15 |     TCG   5   5   2   1   3   0 |     TAG   0   0   0   0   0   0 | Trp TGG   6   6   6   6   6   6
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   1   1   3   4   2   5 | Pro CCT   2   2   1   3   1   4 | His CAT   0   0   1   0   1   0 | Arg CGT   0   0   1   0   0   0
    CTC  12  13  17  16  21   8 |     CCC   6   7   8   5   6   4 |     CAC   4   4   6   5   3   7 |     CGC   5   4   2   4   3   2
    CTA   3   1   3   1   1   2 |     CCA   1   2   4   3   5   8 | Gln CAA   0   0   0   1   1   3 |     CGA   1   0   0   0   2   1
    CTG  43  45  36  29  25  28 |     CCG   8   9   4   7   3   1 |     CAG  11  11  16  13  10  12 |     CGG  12  12   7   3   1   2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   2   3   1   0   1   2 | Thr ACT   2   2   4   3   7   2 | Asn AAT   2   2   3   1   3   0 | Ser AGT   3   2   2   5   3   3
    ATC   4   3   3   6   5   6 |     ACC   5   8   5   7   2   3 |     AAC   3   3   4   4   4   3 |     AGC   5   6   9   5   9   5
    ATA   0   0   1   0   0   3 |     ACA   1   1   2   3   6   3 | Lys AAA   2   1   3   3   5   6 | Arg AGA   4   5   4   6   9   9
Met ATG   6   5   6   7   8   5 |     ACG   5   6   0   5   1   4 |     AAG   5   5   6   7   6   6 |     AGG   5   4   8   8   5   3
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   5   6   6   2   2   3 | Ala GCT   2   2   8   3   7   9 | Asp GAT   2   3   6   2   3   5 | Gly GGT   1   0   2   5   5   7
    GTC   5   3   7   8  10  11 |     GCC  18  16  11  18   7   9 |     GAC  10   9   6   8   8  10 |     GGC   7   8   7   6   9   3
    GTA   0   1   0   0   1   2 |     GCA   3   5   7   4   5   4 | Glu GAA   4   4   5   3   4   5 |     GGA   1   1   0   1   2   5
    GTG  14  13   6  11   8   6 |     GCG  11   9   2   1   3   3 |     GAG  17  17  13  17  18  15 |     GGG   3   4   5   8   2   2
--------------------------------------------------------------------------------------------------------------------------------------

--------------------------------------------------------------------------------------------------------------------------------------
Phe TTT   2   2   5   7   1   9 | Ser TCT   0   0  10   4   4   5 | Tyr TAT   0   1   3   4   1   3 | Cys TGT   5   3   6   9   5   5
    TTC  11   9   6   6  10   6 |     TCC   6   6   4   5   7   7 |     TAC   5   4   3   3   4   4 |     TGC   9  11   9   8  11   9
Leu TTA   0   0   1   8   0   3 |     TCA   0   1   7   3   1   3 | *** TAA   0   0   0   0   0   0 | *** TGA   0   0   0   0   0   0
    TTG   0   2   6   7   0   8 |     TCG   5   4   0   3   0   1 |     TAG   0   0   0   0   0   0 | Trp TGG   6   6   6   7   5   5
--------------------------------------------------------------------------------------------------------------------------------------
Leu CTT   0   2  17   8   6   9 | Pro CCT   4   2   5   5   3   3 | His CAT   0   2   2   2   1   3 | Arg CGT   1   1   2   0   2   1
    CTC  17  20  11  11   4  10 |     CCC   8  11   2   2   7   1 |     CAC   6   5   6   3   4   2 |     CGC   2   5   4   3   2   1
    CTA   0   0   2   1   2   9 |     CCA   2   0   8   2   3   4 | Gln CAA   0   0   3   3   0   1 |     CGA   0   0   0   2   3   1
    CTG  46  40  26  25  51  20 |     CCG   5   7   2   7   4   2 |     CAG  13  14   9   9  17  13 |     CGG   9  11   3   5   6   2
--------------------------------------------------------------------------------------------------------------------------------------
Ile ATT   0   2   6   3   2   7 | Thr ACT   1   2   8   5   6   2 | Asn AAT   0   1   3   2   1   0 | Ser AGT   2   1   3   4   3  10
    ATC   3   2   2   5   8  10 |     ACC   1   4   1   3   4   5 |     AAC   3   3   4   3   2   5 |     AGC   9   7   5   5   4   4
    ATA   0   1   1   2   0   1 |     ACA   1   1   1   2   2   4 | Lys AAA   2   1   5   4   2   7 | Arg AGA   2   1   4   3   3   4
Met ATG   8   5   4   4   3   8 |     ACG   6   7   1   1   5   1 |     AAG   4   5   3   6   1   8 |     AGG  10   7   5   5   7   4
--------------------------------------------------------------------------------------------------------------------------------------
Val GTT   0   2   5   8   3   3 | Ala GCT   2   4  13  17   8   5 | Asp GAT   1   0   8   6   3   3 | Gly GGT   3   1   7   3   0   2
    GTC  10   5   5   3   9   1 |     GCC  18  23   8   6  18   8 |     GAC  12   9   7   4   8   5 |     GGC  10  13   4   3  11   3
    GTA   1   1   4   0   0   3 |     GCA   2   1   5   1   4   9 | Glu GAA   3   1   8   8   3   9 |     GGA   0   0   2   6   4  10
    GTG  13  12   8   9   8   8 |     GCG   8   6   2   5   7   7 |     GAG  15  18   9  19  11  10 |     GGG   8   5   1   3   6   4
--------------------------------------------------------------------------------------------------------------------------------------

Codon position x base (3x4) table for each sequence.

#1: XMA            
position  1:    T:0.16875    C:0.34063    A:0.16875    G:0.32188
position  2:    T:0.34063    C:0.23750    A:0.20625    G:0.21563
position  3:    T:0.09063    C:0.36563    A:0.06563    G:0.47813
Average         T:0.20000    C:0.31458    A:0.14688    G:0.33854

#2: PFO            
position  1:    T:0.16250    C:0.34688    A:0.17500    G:0.31563
position  2:    T:0.33125    C:0.25000    A:0.20313    G:0.21563
position  3:    T:0.09063    C:0.36875    A:0.06875    G:0.47188
Average         T:0.19479    C:0.32188    A:0.14896    G:0.33438

#3: OLA            
position  1:    T:0.18438    C:0.34063    A:0.19063    G:0.28437
position  2:    T:0.33438    C:0.21563    A:0.23750    G:0.21250
position  3:    T:0.14063    C:0.38125    A:0.09375    G:0.38438
Average         T:0.21979    C:0.31250    A:0.17396    G:0.29375

#4: GAC            
position  1:    T:0.18438    C:0.29375    A:0.21875    G:0.30313
position  2:    T:0.33750    C:0.22500    A:0.21563    G:0.22188
position  3:    T:0.10938    C:0.38750    A:0.08438    G:0.41875
Average         T:0.21042    C:0.30208    A:0.17292    G:0.31458

#5: ONI            
position  1:    T:0.20938    C:0.26563    A:0.23125    G:0.29375
position  2:    T:0.34688    C:0.20625    A:0.22500    G:0.22188
position  3:    T:0.15938    C:0.35313    A:0.14063    G:0.34688
Average         T:0.23854    C:0.27500    A:0.19896    G:0.28750

#6: TRU            
position  1:    T:0.22188    C:0.27188    A:0.19688    G:0.30938
position  2:    T:0.34375    C:0.20938    A:0.24063    G:0.20625
position  3:    T:0.19688    C:0.28750    A:0.17813    G:0.33750
Average         T:0.25417    C:0.25625    A:0.20521    G:0.28437

#7: TNI            
position  1:    T:0.15313    C:0.35313    A:0.16250    G:0.33125
position  2:    T:0.34688    C:0.21563    A:0.20000    G:0.23750
position  3:    T:0.06563    C:0.40625    A:0.04063    G:0.48750
Average         T:0.18854    C:0.32500    A:0.13438    G:0.35208

#8: GMO            
position  1:    T:0.15313    C:0.37500    A:0.15625    G:0.31563
position  2:    T:0.32813    C:0.24688    A:0.20000    G:0.22500
position  3:    T:0.08125    C:0.42813    A:0.02500    G:0.46563
Average         T:0.18750    C:0.35000    A:0.12708    G:0.33542

#9: AME            
position  1:    T:0.20625    C:0.31875    A:0.17500    G:0.30000
position  2:    T:0.34063    C:0.24063    A:0.22813    G:0.19063
position  3:    T:0.32188    C:0.25312    A:0.15938    G:0.26563
Average         T:0.28958    C:0.27083    A:0.18750    G:0.25208

#10: DRE            
position  1:    T:0.23125    C:0.27500    A:0.17813    G:0.31563
position  2:    T:0.33438    C:0.22188    A:0.23750    G:0.20625
position  3:    T:0.27188    C:0.22813    A:0.14063    G:0.35938
Average         T:0.27917    C:0.24167    A:0.18542    G:0.29375

#11: LOC            
position  1:    T:0.15313    C:0.35938    A:0.16563    G:0.32188
position  2:    T:0.33438    C:0.25938    A:0.18125    G:0.22500
position  3:    T:0.15313    C:0.35313    A:0.08438    G:0.40938
Average         T:0.21354    C:0.32396    A:0.14375    G:0.31875

#12: LCH            
position  1:    T:0.21250    C:0.25625    A:0.25000    G:0.28125
position  2:    T:0.35938    C:0.20938    A:0.22813    G:0.20313
position  3:    T:0.21875    C:0.25312    A:0.21250    G:0.31563
Average         T:0.26354    C:0.23958    A:0.23021    G:0.26667

Sums of codon usage counts
------------------------------------------------------------------------------
Phe F TTT      38 | Ser S TCT      43 | Tyr Y TAT      21 | Cys C TGT      58
      TTC     107 |       TCC      63 |       TAC      49 |       TGC     127
Leu L TTA      19 |       TCA      23 | *** * TAA       0 | *** * TGA       0
      TTG      69 |       TCG      29 |       TAG       0 | Trp W TGG      71
------------------------------------------------------------------------------
Leu L CTT      58 | Pro P CCT      35 | His H CAT      12 | Arg R CGT       8
      CTC     160 |       CCC      67 |       CAC      55 |       CGC      37
      CTA      25 |       CCA      42 | Gln Q CAA      12 |       CGA      10
      CTG     414 |       CCG      59 |       CAG     148 |       CGG      73
------------------------------------------------------------------------------
Ile I ATT      29 | Thr T ACT      44 | Asn N AAT      18 | Ser S AGT      41
      ATC      57 |       ACC      48 |       AAC      41 |       AGC      73
      ATA       9 |       ACA      27 | Lys K AAA      41 | Arg R AGA      54
Met M ATG      69 |       ACG      42 |       AAG      62 |       AGG      71
------------------------------------------------------------------------------
Val V GTT      45 | Ala A GCT      80 | Asp D GAT      42 | Gly G GGT      36
      GTC      77 |       GCC     160 |       GAC      96 |       GGC      84
      GTA      13 |       GCA      50 | Glu E GAA      57 |       GGA      32
      GTG     116 |       GCG      64 |       GAG     179 |       GGG      51
------------------------------------------------------------------------------


Codon position x base (3x4) table, overall

position  1:    T:0.18672    C:0.31641    A:0.18906    G:0.30781
position  2:    T:0.33984    C:0.22812    A:0.21693    G:0.21510
position  3:    T:0.15833    C:0.33880    A:0.10781    G:0.39505
Average         T:0.22830    C:0.29444    A:0.17127    G:0.30599

Codon frequencies under model, for use in evolver (TTT TTC TTA TTG ... GGG):
  0.01030150  0.02204319  0.00701451  0.02570293
  0.00691503  0.01479680  0.00470859  0.01725346
  0.00657560  0.01407048  0.00000000  0.00000000
  0.00652034  0.01395224  0.00000000  0.01626867
  0.01745652  0.03735351  0.01188651  0.04355517
  0.01171794  0.02507408  0.00797899  0.02923704
  0.01114275  0.02384328  0.00758733  0.02780189
  0.01104911  0.02364291  0.00752357  0.02756826
  0.01043081  0.02231988  0.00710256  0.02602556
  0.00700183  0.01498254  0.00476769  0.01747003
  0.00665813  0.01424709  0.00453366  0.01661248
  0.00660218  0.01412737  0.00449557  0.01647288
  0.01698240  0.03633897  0.01156367  0.04237219
  0.01139968  0.02439306  0.00776228  0.02844294
  0.01084010  0.02319568  0.00738125  0.02704677
  0.01074901  0.02300076  0.00731923  0.02681949



Nei & Gojobori 1986. dN/dS (dN, dS)
(Note: This matrix is not used in later ML. analysis.
Use runmode = -2 for ML pairwise comparison.)

XMA                 
PFO                  0.2069 (0.0174 0.0843)
OLA                  0.2308 (0.1398 0.6056) 0.2309 (0.1462 0.6331)
GAC                  0.2132 (0.1305 0.6121) 0.2166 (0.1340 0.6188) 0.2125 (0.1332 0.6269)
ONI                  0.1667 (0.1500 0.8995) 0.1733 (0.1582 0.9130) 0.2126 (0.1473 0.6925) 0.1505 (0.0953 0.6331)
TRU                  0.1306 (0.1719 1.3158) 0.1343 (0.1756 1.3073) 0.1895 (0.1809 0.9545) 0.1156 (0.0954 0.8252) 0.1906 (0.1332 0.6986)
TNI                  0.2834 (0.1901 0.6708) 0.3104 (0.2027 0.6529) 0.2821 (0.2031 0.7200) 0.2072 (0.1496 0.7221) 0.1859 (0.1819 0.9788) 0.1540 (0.1168 0.7585)
GMO                  0.2895 (0.1677 0.5793) 0.2852 (0.1655 0.5801) 0.2730 (0.1821 0.6672) 0.2316 (0.1486 0.6416) 0.1537 (0.1782 1.1598) 0.1369 (0.1908 1.3934) 0.3120 (0.2192 0.7026)
AME                  0.1228 (0.2121 1.7266) 0.1427 (0.2199 1.5412) 0.1066 (0.2080 1.9514) 0.1088 (0.1948 1.7898) 0.1542 (0.2207 1.4309) 0.1087 (0.2159 1.9859) 0.1519 (0.2642 1.7390) 0.1076 (0.1947 1.8100)
DRE                  0.1233 (0.2296 1.8622) 0.1282 (0.2373 1.8506) 0.1837 (0.2694 1.4666) 0.1321 (0.2352 1.7803) 0.1181 (0.2358 1.9974) 0.0912 (0.2258 2.4771) 0.1301 (0.2631 2.0215) 0.2028 (0.2543 1.2538) 0.0985 (0.1799 1.8268)
LOC                  0.3539 (0.2765 0.7812) 0.3715 (0.2811 0.7566) 0.2337 (0.2769 1.1847) 0.2253 (0.2551 1.1320) 0.2617 (0.3008 1.1493) 0.1746 (0.2985 1.7090) 0.3509 (0.3365 0.9590) 0.2688 (0.2551 0.9491) 0.1365 (0.2420 1.7734) 0.1381 (0.3096 2.2426)
LCH                  0.2104 (0.5456 2.5930) 0.2517 (0.5565 2.2114) 0.2328 (0.5819 2.4999) 0.2483 (0.5477 2.2055) 0.1995 (0.5643 2.8293) 0.1794 (0.5626 3.1365) 0.2112 (0.5747 2.7210) 0.2766 (0.5692 2.0582) 0.1728 (0.5434 3.1452) 0.3127 (0.5556 1.7765) 0.2318 (0.5550 2.3943)


TREE #  1:  ((((((((1, 2), 3), 4), 5), (6, 7)), 8), (9, 10)), 11, 12);   MP score: 1475
lnL(ntime: 21  np: 25):  -7966.815315      +0.000000
  13..14   14..15   15..16   16..17   17..18   18..19   19..20   20..1    20..2    19..3    18..4    17..5    16..21   21..6    21..7    15..8    14..22   22..9    22..10   13..11   13..12 
 0.257018 0.330161 0.204628 0.016123 0.011475 0.208310 0.512886 0.026914 0.080636 0.452798 0.300432 0.426391 0.357048 0.259059 0.688154 0.768156 0.307266 0.620534 1.085126 1.257209 3.165853 2.418025 0.503688 0.147317 0.073870

Note: Branch length is defined as number of nucleotide substitutions per codon (not per neucleotide site).

tree length =  11.33617

((((((((1: 0.026914, 2: 0.080636): 0.512886, 3: 0.452798): 0.208310, 4: 0.300432): 0.011475, 5: 0.426391): 0.016123, (6: 0.259059, 7: 0.688154): 0.357048): 0.204628, 8: 0.768156): 0.330161, (9: 0.620534, 10: 1.085126): 0.307266): 0.257018, 11: 1.257209, 12: 3.165853);

((((((((XMA: 0.026914, PFO: 0.080636): 0.512886, OLA: 0.452798): 0.208310, GAC: 0.300432): 0.011475, ONI: 0.426391): 0.016123, (TRU: 0.259059, TNI: 0.688154): 0.357048): 0.204628, GMO: 0.768156): 0.330161, (AME: 0.620534, DRE: 1.085126): 0.307266): 0.257018, LOC: 1.257209, LCH: 3.165853);

Detailed output identifying parameters

kappa (ts/tv) =  2.41802


MLEs of dN/dS (w) for site classes (K=4)

site class             0        1       2a       2b
proportion       0.50369  0.14732  0.27002  0.07897
background w     0.07387  1.00000  0.07387  1.00000
foreground w     0.07387  1.00000  1.00000  1.00000


Time used:  1:42
