antibiotics & Secondary Metabolite Analysis SHell
Version 3.0.5

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- Download XLS overview file
- Download EMBL summary file
- Download GenBank summary file
- Download BiosynML file

Select Gene Cluster:

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### Identified secondary metabolite clusters

Cluster | Type | From | To | Most similar known cluster | MIBiG BGC-ID
--- | --- | --- | --- | --- | ---
The following clusters are from record scaffold10.1:
Cluster 1 | Nrps-Ladderane | 1 | 30645 | Polymyxin_biosynthetic_gene_cluster (60% of genes show similarity) | BGC0001153_c1
The following clusters are from record scaffold14.1:
Cluster 2 | Lantipeptide | 16058 | 38745 | - | -
The following clusters are from record scaffold17.1:
Cluster 3 | Nrps-T1pks | 34050 | 88075 | Bacitracin_biosynthetic_gene_cluster (22% of genes show similarity) | BGC0000310_c1
The following clusters are from record scaffold18.1:
Cluster 4 | Nrps | 1 | 22697 | - | -
The following clusters are from record scaffold2.1:
Cluster 5 | Nrps | 374269 | 435932 | - | -
The following clusters are from record scaffold21.1:
Cluster 6 | Nrps | 46174 | 68185 | - | -
The following clusters are from record scaffold26.1:
Cluster 7 | Nrps | 1 | 44652 | Paenilarvins_biosynthetic_gene_cluster (75% of genes show similarity) | BGC0000402_c1
The following clusters are from record scaffold3.1:
Cluster 8 | Nrps | 185067 | 250981 | - | -
The following clusters are from record scaffold36.1:
Cluster 9 | Nrps | 1 | 11873 | - | -
The following clusters are from record scaffold45.1:
Cluster 10 | Nrps | 1 | 7260 | Colistin_biosynthetic_gene_cluster (60% of genes show similarity) | BGC0001192_c1
The following clusters are from record scaffold5.1:
Cluster 11 | Bacteriocin | 13614 | 27482 | - | -
The following clusters are from record scaffold51.1:
Cluster 12 | Nrps | 1 | 7560 | Bacillomycin_biosynthetic_gene_cluster (20% of genes show similarity) | BGC0001090_c1
The following clusters are from record scaffold54.1:
Cluster 13 | Other | 1 | 5176 | - | -
The following clusters are from record scaffold57.1:
Cluster 14 | Nrps | 1 | 2180 | - | -
The following clusters are from record scaffold6.1:
Cluster 15 | Terpene | 35914 | 57773 | - | -
The following clusters are from record scaffold60.1:
Cluster 16 | Nrps | 1 | 4262 | Pelgipeptin_biosynthetic_gene_cluster (37% of genes show similarity) | BGC0000403_c1
The following clusters are from record scaffold7.1:
Cluster 17 | Nrps | 84176 | 133931 | Bacillibactin_biosynthetic_gene_cluster (46% of genes show similarity) | BGC0000309_c1
The following clusters are from record scaffold9.1:
Cluster 18 | Bacteriocin | 33659 | 43922 | - | -

### scaffold10.1 - Cluster 1 - Nrps-ladderane

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (thr) + (nrp)
AZF08_18305
  NRPSPredictor2 SVM: hydrophilic
  Stachelhaus code: N/A
  Minowa: orn
  consensus: nrp
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_18315
  NRPSPredictor2 SVM: thr
  Stachelhaus code: thr
  Minowa: thr
  consensus: thr
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold10.1 - Gene Cluster 1. Type = nrps-ladderane. Location: 1 - 30645 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
ladderane: (ladderane)

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### Homologous known gene clusters

### scaffold14.1 - Cluster 2 - Lantipeptide

### Gene cluster description

Download cluster GenBank file
scaffold14.1 - Gene Cluster 2. Type = lantipeptide. Location: 16058 - 38745 nt. Click on genes for more information.
Show pHMM detection rules used
lantipeptide: ((Lant_dehyd_N & Lant_dehyd_C) or cluster(LANC_like,Flavoprotein) or cluster(LANC_like,Trp_halogenase) or cluster(LANC_like,p450) or (LANC_like & Pkinase) or (LANC_like & DUF4135) or cluster(LANC_like,Lant_dehyd_N) or cluster(LANC_like,Lant_dehyd_C) or cluster(LANC_like,adh_short) or cluster(LANC_like,adh_short_C2) or TIGR03731 or Antimicr18 or Gallidermin or L_biotic_A or TIGR03731 or leader_d or leader_eh or leader_abc or mature_d or mature_ab or mature_a or mature_b or mature_ha or mature_h_beta or lacticin_l or lacticin_mat or LD_lanti_pre or strep_PEQAXS)

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

No core peptides found.

### Homologous gene clusters

### scaffold17.1 - Cluster 3 - Nrps-t1pks

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (nrp) + (nrp) + (phe) + (pk) + (nrp) + (phe)
AZF08_22975
  NRPSPredictor2 SVM: N/A
  Stachelhaus code: orn
  Minowa: arg
  consensus: nrp
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_22985
  NRPSPredictor2 SVM: hydrophobic-aliphatic
  Stachelhaus code: N/A
  Minowa: leu
  consensus: nrp
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_23050
  NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
  Stachelhaus code: phe
  Minowa: phe
  consensus: phe
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_23055
  PKS signature: N/A
  Minowa: inactive
  consensus: pk
AZF08_23065
  NRPSPredictor2 SVM: N/A
  Stachelhaus code: tyr
  Minowa: phe
  consensus: nrp
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_23090
  NRPSPredictor2 SVM: phe
  Stachelhaus code: phe
  Minowa: phe
  consensus: phe
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold17.1 - Gene Cluster 3. Type = nrps-t1pks. Location: 34050 - 88075 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))
t1pks: ((PKS_KS & PKS_AT) or (ene_KS & PKS_AT) or (mod_KS & PKS_AT) or (hyb_KS & PKS_AT) or (itr_KS & PKS_AT) or (tra_KS & PKS_AT))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### Homologous known gene clusters

### scaffold18.1 - Cluster 4 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (asn)
AZF08_23100
  NRPSPredictor2 SVM: asn
  Stachelhaus code: asn
  Minowa: asn
  consensus: asn
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold18.1 - Gene Cluster 4. Type = nrps. Location: 1 - 22697 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### scaffold2.1 - Cluster 5 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (thr-leu) + (nrp-nrp) + (nrp-nrp)
AZF08_07530
  NRPSPredictor2 SVM: thr
  Stachelhaus code: thr
  Minowa: thr
  consensus: thr
  NRPSPredictor2 SVM: leu
  Stachelhaus code: trp
  Minowa: leu
  consensus: leu
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_07535
  NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
  Stachelhaus code: gly
  Minowa: leu
  consensus: nrp
  NRPSPredictor2 SVM: val,leu,ile,abu,iva
  Stachelhaus code: cys
  Minowa: leu
  consensus: nrp
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_07540
  NRPSPredictor2 SVM: val,leu,ile,abu,iva
  Stachelhaus code: ile
  Minowa: leu
  consensus: nrp
  NRPSPredictor2 SVM: gly,ala,val,leu,ile,abu,iva
  Stachelhaus code: thr
  Minowa: leu
  consensus: nrp
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold2.1 - Gene Cluster 5. Type = nrps. Location: 374269 - 435932 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### scaffold21.1 - Cluster 6 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold21.1 - Gene Cluster 6. Type = nrps. Location: 46174 - 68185 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### scaffold26.1 - Cluster 7 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (glu) + (thr) + (gly) + (tyr) + (ile)
AZF08_26050
  NRPSPredictor2 SVM: glu
  Stachelhaus code: glu
  Minowa: ser
  consensus: glu
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_26060
  NRPSPredictor2 SVM: thr
  Stachelhaus code: thr
  Minowa: thr
  consensus: thr
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_26065
  NRPSPredictor2 SVM: gly
  Stachelhaus code: gly
  Minowa: gly
  consensus: gly
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_26070
  NRPSPredictor2 SVM: tyr
  Stachelhaus code: asn
  Minowa: tyr
  consensus: tyr
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_26075
  NRPSPredictor2 SVM: ile
  Stachelhaus code: ile
  Minowa: ile
  consensus: ile
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold26.1 - Gene Cluster 7. Type = nrps. Location: 1 - 44652 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### Homologous known gene clusters

### scaffold3.1 - Cluster 8 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (thr) + (nrp-ala) + (ser-leu-nrp-nrp)
AZF08_09620
  NRPSPredictor2 SVM: thr
  Stachelhaus code: thr
  Minowa: thr
  consensus: thr
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_09625
  NRPSPredictor2 SVM: hydrophobic-aliphatic
  Stachelhaus code: gln
  Minowa: ser
  consensus: nrp
  NRPSPredictor2 SVM: ala
  Stachelhaus code: ala
  Minowa: ala
  consensus: ala
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_09630
  NRPSPredictor2 SVM: ser
  Stachelhaus code: ser
  Minowa: ser
  consensus: ser
  NRPSPredictor2 SVM: leu
  Stachelhaus code: pro
  Minowa: leu
  consensus: leu
  NRPSPredictor2 SVM: asp,asn,glu,gln,aad
  Stachelhaus code: glu
  Minowa: orn
  consensus: nrp
  NRPSPredictor2 SVM: asp,asn,glu,gln,aad
  Stachelhaus code: glu
  Minowa: orn
  consensus: nrp
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold3.1 - Gene Cluster 8. Type = nrps. Location: 185067 - 250981 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### scaffold36.1 - Cluster 9 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (nrp-cys)
AZF08_27250
  NRPSPredictor2 SVM: hydrophobic-aliphatic
  Stachelhaus code: gly
  Minowa: phe
  consensus: nrp
  NRPSPredictor2 SVM: cys
  Stachelhaus code: cys
  Minowa: cys
  consensus: cys
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold36.1 - Gene Cluster 9. Type = nrps. Location: 1 - 11873 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### scaffold45.1 - Cluster 10 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (val)
AZF08_27635
  NRPSPredictor2 SVM: val
  Stachelhaus code: val
  Minowa: val
  consensus: val
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold45.1 - Gene Cluster 10. Type = nrps. Location: 1 - 7260 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### Homologous known gene clusters

### scaffold5.1 - Cluster 11 - Bacteriocin

### Gene cluster description

Download cluster GenBank file
scaffold5.1 - Gene Cluster 11. Type = bacteriocin. Location: 13614 - 27482 nt. Click on genes for more information.
Show pHMM detection rules used
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Bacteriocin_Iii or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03605 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03882 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692)

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Homologous gene clusters

### scaffold51.1 - Cluster 12 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (leu)
AZF08_27835
  NRPSPredictor2 SVM: leu
  Stachelhaus code: leu
  Minowa: leu
  consensus: leu
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold51.1 - Gene Cluster 12. Type = nrps. Location: 1 - 7560 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### Homologous known gene clusters

### scaffold54.1 - Cluster 13 - Other

### Gene cluster description

Download cluster GenBank file
scaffold54.1 - Gene Cluster 13. Type = other. Location: 1 - 5176 nt. Click on genes for more information.
Show pHMM detection rules used
other: ((PP-binding & AMP-binding) or (PP-binding & A-OX) or (NAD_binding_4 & A-OX) or (NAD_binding_4 & AMP-binding) or LmbU or Neocarzinostat or cycdipepsynth or fom1 or bcpB or frbD or mitE or vlmB or prnB or CaiA or bacilysin or orf2_PTase)

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Homologous gene clusters

### scaffold57.1 - Cluster 14 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  N/A

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold57.1 - Gene Cluster 14. Type = nrps. Location: 1 - 2180 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

No significant ClusterBlast hits found.

### scaffold6.1 - Cluster 15 - Terpene

### Gene cluster description

Download cluster GenBank file
scaffold6.1 - Gene Cluster 15. Type = terpene. Location: 35914 - 57773 nt. Click on genes for more information.
Show pHMM detection rules used
terpene: (Terpene_Synth or Terpene_synth_C or phytoene_synt or Lycopene_cycl or terpene_cyclase or NapT7 or fung_ggpps or fung_ggpps2 or trichodiene_synth)

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Homologous gene clusters

### scaffold60.1 - Cluster 16 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (gly)
AZF08_27995
  NRPSPredictor2 SVM: gly
  Stachelhaus code: gly
  Minowa: gly
  consensus: gly
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold60.1 - Gene Cluster 16. Type = nrps. Location: 1 - 4262 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### Homologous known gene clusters

### scaffold7.1 - Cluster 17 - Nrps

### Predicted core structure

Rough prediction of core scaffold based on assumed PKS/NRPS colinearity; tailoring reactions not taken into account

### Prediction details

Monomers prediction:
  (dhb) + (gly-thr)
AZF08_15660
  NRPSPredictor2 SVM: gly
  Stachelhaus code: gly
  Minowa: gly
  consensus: gly
  NRPSPredictor2 SVM: thr
  Stachelhaus code: thr
  Minowa: thr
  consensus: thr
  Search NORINE for peptide in strict mode // relaxed mode
AZF08_15670
  NRPSPredictor2 SVM: dhb
  Stachelhaus code: dhb
  Minowa: dhb
  consensus: dhb
  Search NORINE for peptide in strict mode // relaxed mode

### Database cross-links

Link to NORINE database query form
Direct lookup in NORINE database in strict mode // relaxed mode

### Gene cluster description

Download cluster GenBank file
scaffold7.1 - Gene Cluster 17. Type = nrps. Location: 84176 - 133931 nt. Click on genes for more information.
Show pHMM detection rules used
nrps: ((Condensation & AMP-binding) or (Condensation & A-OX) or cluster(Condensation,AMP-binding))

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Detailed annotation

### Homologous gene clusters

### Homologous known gene clusters

### scaffold9.1 - Cluster 18 - Bacteriocin

### Gene cluster description

Download cluster GenBank file
scaffold9.1 - Gene Cluster 18. Type = bacteriocin. Location: 33659 - 43922 nt. Click on genes for more information.
Show pHMM detection rules used
bacteriocin: (strepbact or Antimicrobial14 or Bacteriocin_IId or BacteriocIIc_cy or Bacteriocin_II or Bacteriocin_IIi or Lactococcin or Antimicrobial17 or Lactococcin_972 or Bacteriocin_IIc or LcnG-beta or Bacteriocin_Iii or Cloacin or Linocin_M18 or TIGR03603 or TIGR03604 or TIGR03605 or TIGR03651 or TIGR03678 or TIGR03693 or TIGR03798 or TIGR03882 or TIGR03601 or TIGR03602 or TIGR03795 or TIGR03793 or TIGR03975 or DUF692)

#### Legend:

biosynthetic genes
transport-related genes
regulatory genes
other genes

### Homologous gene clusters